Research Articles

  1. Complex activity and short-term plasticity of human cerebral organoids reciprocally connected with axons
    Tatsuya Osaki, Tomoya Duenki, Siu Yu A. Chow, Yasuhiro Ikegami, Romain Beaubois, Timothée Levi, Nao Nakagawa-Tamagawa, Yoji Hirano, Yoshiho Ikeuchi
    Nature Communications 15 2945 2024
  2. dCas13-mediated translational repression for accurate gene silencing in mammalian cells.
    Antonios Apostolopoulos, Naohiro Kawamoto, Siu Yu A Chow, Hitomi Tsuiji, Yoshiho Ikeuchi, Yuichi Shichino, Shintaro Iwasaki
    Nature communications 15(1) 2205-2205 2024
  3. A simple and inexpensive laser dissection of fasciculated axons from motor nerve organoids
    Yasuhiro Ikegami, Tomoya Duenki, Ikuma Arakaki, Ryo Sakai, Tatsuya Osaki, Satoshi Ashihara, Tsuyoshi Furushima, Yoshiho Ikeuchi
    Frontiers in Bioengineering and Biotechnology 12 2024
  4. MeCP2 represses the activity of topoisomerase IIβ in long neuronal genes.
    Sabin A Nettles, Yoshiho Ikeuchi, Katheryn B Lefton, Ladan Abbasi, Alyssa Erickson, Chibueze Agwu, Thomas Papouin, Azad Bonni, Harrison W Gabel
    Cell reports 42 (12) 2023
  5. yaaJ, the tRNA-Specific Adenosine Deaminase, Is Dispensable in Bacillus subtilis
    Akiko Soma, Atsushi Kubota, Daisuke Tomoe, Yoshiho Ikeuchi, Fujio Kawamura, Hijiri Arimoto, Yuh Shiwa, Yu Kanesaki, Hideaki Nanamiya, Hirofumi Yoshikawa, Tsutomu Suzuki, Yasuhiko Sekine
    Genes 14(8) 1515-1515 2023
  6. Absolute calibration of ribosome profiling assesses the dynamics of ribosomal flux on transcripts
    Kotaro Tomuro, Mari Mito, Takahito Miyake, Siu Yu A. Chow, Masao Doi, Yoshiho Ikeuchi, Yuichi Shichino, Shintaro Iwasaki
    BioRxiv 2023
  7. High-throughput Assessment of Mitochondrial Protein Synthesis in Mammalian Cells Using Mito-FUNCAT FACS.
    Hironori Saito, Tatsuya Osaki, Yoshiho Ikeuchi, Shintaro Iwasaki
    Bio-protocol 13(3) 2023
  8. Human sensory neurons modulate melanocytes through secretion of RGMB.
    Siu Yu A Chow, Kazuki Nakayama, Tatsuya Osaki, Maki Sugiyama, Maiko Yamada, Hirotaka Takeuchi, Yoshiho Ikeuchi
    Cell reports 40(12) 111366-111366 2022
  9. Mito-FUNCAT-FACS reveals cellular heterogeneity in mitochondrial translation.
    Yusuke Kimura, Hironori Saito, Tatsuya Osaki, Yasuhiro Ikegami, Taisei Wakigawa, Yoshiho Ikeuchi, Shintaro Iwasaki
    RNA (New York, N.Y.) 28(6) 895-904 2022
  10. Localised light delivery on melanoma cells using optical microneedles.
    Xiaobin Wu, Jongho Park, Siu Yu A Chow, Maria Carmelita Z Kasuya, Yoshiho Ikeuchi, Beomjoon Kim
    Biomedical optics express 13(2) 1045-1060 2022
  11. Two-photon, red light uncaging of alkyl radicals from organorhodium(iii) phthalocyanine complexes
    Kei Murata, Yuki Saibe, Mayu Uchida, Mizuki Aono, Ryuji Misawa, Yoshiho Ikeuchi, Kazuyuki Ishii
    Chemical Communications 2022
  12. Light-Induced Differentiation of Forebrain Organoids by NVOC-SAG.
    Ryuji Misawa, Yoshiho Ikeuchi
    Methods in molecular biology (Clifton, N.J.) 2374 185-194 2022
  13. Modeling Axonal Degeneration Using Motor Nerve Organoids.
    Siu Yu A Chow, Yui Nakanishi, Shohei Kaneda, Yoshiho Ikeuchi
    Methods in molecular biology (Clifton, N.J.) 2515 89-97 2022
  14. Self-Deformable Flexible MEMS Tweezer Composed of Poly(Vinylidene Fluoride)/Ionic Liquid Gel for Electrical Measurements and Soft Gripping
    Takafumi Yamaguchi, Naoto Usami, Kei Misumi, Atsushi Toyokura, Akio Higo, Shimpei Ono, Gilgueng Hwang, Guilhem Larrieu, Yoshiho Ikeuchi, Agnes Tixier-Mita, Ken Saito, Timothee Levi, Yoshio Mita
    Journal of Microelectromechanical Systems 31(5) 1-11 2022
  15. eIF2B-capturing viral protein NSs suppresses the integrated stress response
    Kazuhiro Kashiwagi, Yuichi Shichino, Tatsuya Osaki, Ayako Sakamoto, Madoka Nishimoto, Mari Takahashi, Mari Mito, Friedemann Weber, Yoshiho Ikeuchi, Shintaro Iwasaki, Takuhiro Ito
    Nature communications 2021
  16. Reduced PHOX2B stability causes axonal growth impairment in motor neurons with TARDBP mutations.
    Shio Mitsuzawa, Naoki Suzuki, Tetsuya Akiyama, Mitsuru Ishikawa, Takefumi Sone, Jiro Kawada, Ryo Funayama, Matsuyuki Shirota, Hiroaki Mitsuhashi, Satoru Morimoto, Kensuke Ikeda, Tomomi Shijo, Akiyuki Ohno, Naoko Nakamura, Hiroya Ono, Risako Ono, Shion Osana, Tadashi Nakagawa, Ayumi Nishiyama, Rumiko Izumi, Shohei Kaneda, Yoshiho Ikeuchi, Keiko Nakayama, Teruo Fujii, Hitoshi Warita, Hideyuki Okano, Masashi Aoki
    Stem cell reports 16(6) 1527-1541 2021
  17. Light-inducible control of cellular proliferation and differentiation by a Hedgehog signaling inhibitor
    Ryuji Misawa, Tsuyoshi Minami, Akimitsu Okamoto, Yoshiho Ikeuchi
    Bioorganic & Medicinal Chemistry 38 116144-116144 2021
  18. Loss of Ftsj1 perturbs codon-specific translation efficiency in the brain and is associated with X-linked intellectual disability
    Y. Nagayoshi, T. Chujo, S. Hirata, H. Nakatsuka, C.-W. Chen, M. Takakura, K. Miyauchi, Y. Ikeuchi, B. C. Carlyle, R. R. Kitchen, T. Suzuki, F. Katsuoka, M. Yamamoto, Y. Goto, M. Tanaka, K. Natsume, A. C. Nairn, T. Suzuki, K. Tomizawa, F.-Y. Wei
    Science Advances 7(13) eabf3072-eabf3072 2021
  19. Three-dimensional imaging of the hyperpigmented skin of senile lentigo reveals underlying higher density intracutaneous nerve fibers.
    Kazuki Nakayama, Shoko Sassa, Maki Sugiyama, Motonori Kurosumi, Shu Nishikori, Siu Yu A Chow, Tamio Suzuki, Yoshiho Ikeuchi
    Journal of Dermatological Science 2021
  20. PIAS1 and TIF1γ collaborate to promote SnoN SUMOylation and suppression of epithelial–mesenchymal transition.
    Ayan Chanda, Yoshiho Ikeuchi, Kunal Karve, Anusi Sarkar, Amrita Singh Chandhoke, Lili Deng, Azad Bonni, Shirin Bonni
    Cell Death & Differentiation 2021
  21. Three-Dimensional Motor Nerve Organoid Generation
    Tatsuya Osaki, Siu Yu A. Chow, Yui Nakanishi, Joel Hernández, Jiro Kawada, Teruo Fujii, Yoshiho Ikeuchi
    Journal of Visualized Experiments (163) 2020
  22. TFT sensor array for real-time cellular characterization, stimulation, impedance measurement and optical imaging of in-vitro neural cells.
    Faruk Azam Shaik, Satoshi Ihida, Yoshiho Ikeuchi, Agnès Tixier-Mita, Hiroshi Toshiyoshi
    Biosensors & bioelectronics 169 112546-112546 2020
  23. A Light-Inducible Hedgehog Signaling Activator Modulates Proliferation and Differentiation of Neural Cells
    Ryuji Misawa, Tsuyoshi Minami, Akimitsu Okamoto, Yoshiho Ikeuchi
    ACS Chemical Biology 15(6) 1595-1603 2020
  24. A widespread family of heat-resistant obscure (Hero) proteins protect against protein instability and aggregation.
    Kotaro Tsuboyama, Tatsuya Osaki, Eriko Matsuura-Suzuki, Hiroko Kozuka-Hata, Yuki Okada, Masaaki Oyama, Yoshiho Ikeuchi, Shintaro Iwasaki, Yukihide Tomari
    PLoS biology 18(3) e3000632 2020
  25. Boyden chamber-based compartmentalized tumor spheroid culture system to implement localized anticancer drug treatment
    Shohei Kaneda, Jiro Kawada, Marie Shinohara, Momoko Kumemura, Ryohei Ueno, Tomoaki Kawamoto, Kenji Suzuki, Beomjoon Kim, Yoshiho Ikeuchi, Yasuyuki Sakai, Dominique Collard, Hiroyuki Fujita, Teruo Fujii
    Biomicrofluidics 13(5) 2019
  26. Aberrant axon branching via Fos-B dysregulation in FUS-ALS motor neurons.
    Tetsuya Akiyama, Naoki Suzuki, Mitsuru Ishikawa, Koki Fujimori, Takefumi Sone, Jiro Kawada, Ryo Funayama, Fumiyoshi Fujishima, Shio Mitsuzawa, Kensuke Ikeda, Hiroya Ono, Tomomi Shijo, Shion Osana, Matsuyuki Shirota, Tadashi Nakagawa, Yasuo Kitajima, Ayumi Nishiyama, Rumiko Izumi, Satoru Morimoto, Yohei Okada, Takayuki Kamei, Mayumi Nishida, Masahiro Nogami, Shohei Kaneda, Yoshiho Ikeuchi, Hiroaki Mitsuhashi, Keiko Nakayama, Teruo Fujii, Hitoshi Warita, Hideyuki Okano, Masashi Aoki
    EBioMedicine 45 362-378 2019
  27. A Human Induced Pluripotent Stem Cell-Derived Tissue Model of a Cerebral Tract Connecting Two Cortical Regions.
    Kirihara T, Luo Z, Chow SYA, Misawa R, Kawada J, Shibata S, Khoyratee F, Vollette CA, Volz V, Levi T, Fujii T, Ikeuchi Y
    iScience 14 301-311 2019
  28. The Transcriptional Regulator SnoN Promotes the Proliferation of Cerebellar Granule Neuron Precursors in the Postnatal Mouse Brain.
    Chen X, Chanda A, Ikeuchi Y, Zhang X, Goodman JV, Reddy NC, Majidi SP, Wu DY, Smith SE, Godec A, Oldenborg A, Gabel HW, Zhao G, Bonni S, Bonni A
    The Journal of neuroscience : the official journal of the Society for Neuroscience 39(1) 44-62 2019
  29. Biomimetic Spiking Neural Network (SNN) Systems for 'In Vitro' Cells Stimulation.
    Farad Khoyratee, Stephany Mai Nishikawa, Zhongyue Luo, Soo, Hyeon Kim, Sylvain Saïghi, Teruo Fujii, Yoshiho Ikeuchi, Kazuyuki Aihara, Timothée Levi
    IEEE International Symposium on Circuits and Systems, ISCAS 2019, Sapporo, Japan, May 26-29, 2019 1-5 2019
  30. Characterization of a Mouse Model of Börjeson-Forssman-Lehmann Syndrome.
    Cheng C, Deng PY, Ikeuchi Y, Yuede C, Li D, Rensing N, Huang J, Baldridge D, Maloney SE, Dougherty JD, Constantino J, Jahani-Asl A, Wong M, Wozniak DF, Wang T, Klyachko VA, Bonni A
    Cell reports 25(6) 1404-1414.e6 2018
  31. Biomimetic microfluidic neurons for bio-hybrid experiments
    Nishikawa Stephany Mai, Kim Soo Hyeon, Luo Zhongyue, Kirihara Takaaki, Ikeuchi Yoshiho, Fujii Teruo, Levi Timothee
    ARTIFICIAL LIFE AND ROBOTICS 23(3) 402-408 2018
  32. Electrical Stimulation, Recording and Impedance-Based Real-Time Position Detection of Cultured Neurons Using Thin-Film-Transistor Array
    Faruk Azam Shaik, Grant Alexander Cathcart, Satoshi Ihida, Yoshiho Ikeuchi, Agnes Tixier-Mita, Hiroshi Toshiyoshi
    JOURNAL OF MICROELECTROMECHANICAL SYSTEMS 27(3) 424-433 2018
  33. Palladin Is a Neuron-Specific Translational Target of mTOR Signaling That Regulates Axon Morphogenesis
    Yusuke Umegaki, Antonio Mart{\'{\i } }nez Brotons, Yui Nakanishi, Zhongyue Luo, Hanlu Zhang, Azad Bonni, Yoshiho Ikeuchi
    The Journal of Neuroscience 38(21) 4985-4995 2018
  34. Digital implementation of Hodgkin–Huxley neuron model for neurological diseases studies
    Timothée Levi, Farad Khoyratee, Sylvain Saïghi, Yoshiho Ikeuchi
    Artificial Life and Robotics 23(1) 10-14 2018
  35. Metabolic and chemical regulation of tRNA modification associated with taurine deficiency and human disease
    Kana Asano, Takeo Suzuki, Ayaka Saito, Fan-Yan Wei, Yoshiho Ikeuchi, Tomoyuki Numata, Ryou Tanaka, Yoshihisa Yamane, Takeshi Yamamoto, Takanobu Goto, Yoshihito Kishita, Kei Murayama, Akira Ohtake, Yasushi Okazaki, Kazuhito Tomizawa, Yuriko Sakaguchi, Tsutomu Suzuki
    Nucleic Acids Research 46(4) 1565-1583 2018
  36. Bundle Gel Fibers with a Tunable Microenvironment for in Vitro Neuron Cell Guiding
    Sayaka Tachizawa, Haruko Takahashi, Young-Jin Kim, Aoi Odawara, Joris Pauty, Yoshiho Ikeuchi, Ikuro Suzuki, Akihiko Kikuchi, Yukiko T. Matsunaga
    ACS APPLIED MATERIALS & INTERFACES 9(49) 43250-43257 2017
  37. Generation of a Motor Nerve Organoid with Human Stem Cell-Derived Neurons
    Jiro Kawada, Shohei Kaneda, Takaaki Kirihara, Asif Maroof, Timothee Levi, Kevin Eggan, Teruo Fujii, Yoshiho Ikeuchi
    STEM CELL REPORTS 9(5) 1441-1449 2017
  38. Compartmentalized embryoid body culture for induction of spatially patterned differentiation
    Shohei Kaneda, Jiro Kawada, Hidenori Akutsu, Justin Ichida, Yoshiho Ikeuchi, Teruo Fujii
    BIOMICROFLUIDICS 11(4) 041101 2017
  39. A Cdh1-APC/FMRP Ubiquitin Signaling Link Drives mGluR-Dependent Synaptic Plasticity in the Mammalian Brain
    Ju Huang, Yoshiho Ikeuchi, Marcos Malumbres, Azad Bonni
    NEURON 86(3) 726-739 2015
  40. In utero gene therapy rescues microcephaly caused by Pqbp1-hypofunction in neural stem progenitor cells
    H. Ito, H. Shiwaku, C. Yoshida, H. Homma, H. Luo, X. Chen, K. Fujita, L. Musante, U. Fischer, S. G. M. Frints, C. Romano, Y. Ikeuchi, T. Shimamura, S. Imoto, S. Miyano, S-i Muramatsu, T. Kawauchi, M. Hoshino, M. Sudol, A. Arumughan, E. E. Wanker, T. Rich, C. Schwartz, F. Matsuzaki, A. Bonni, V. M. Kalscheuer, H. Okazawa
    MOLECULAR PSYCHIATRY 20(4) 459-471 2015
  41. A Single Acetylation of 18 S rRNA Is Essential for Biogenesis of the Small Ribosomal Subunit in Saccharomyces cerevisiae
    Satoshi Ito, Yu Akamatsu, Akiko Noma, Satoshi Kimura, Kenjyo Miyauchi, Yoshiho Ikeuchi, Takeo Suzuki, Tsutomu Suzuki
    JOURNAL OF BIOLOGICAL CHEMISTRY 289(38) 26201-26212 2014
  42. TIF1γ protein regulates epithelial-mesenchymal transition by operating as a small ubiquitin-like modifier (SUMO) E3 ligase for the transcriptional regulator SnoN1.
    Ikeuchi Y, Dadakhujaev S, Chandhoke AS, Huynh MA, Oldenborg A, Ikeuchi M, Deng L, Bennett EJ, Harper JW, Bonni A, Bonni S
    JOURNAL OF BIOLOGICAL CHEMISTRY289(36) 25067-25078 2014
  43. Discovery of the β-barrel-type RNA methyltransferase responsible for N6-methylation of N6-threonylcarbamoyladenosine in tRNAs.
    Kimura S, Miyauchi K, Ikeuchi Y, Thiaville PC, Crécy-Lagard Vd, Suzuki T, Nucleic acids research, v
    Nucleic acids research 42(14) 9350-9365 2014
  44. A Novel Hap1-Tsc1 Interaction Regulates Neuronal mTORC1 Signaling and Morphogenesis in the Brain
    Luis A. Mejia, Nadia Litterman, Yoshiho Ikeuchi, Luis de la Torre-Ubieta, Eric J. Bennett, Chi Zhang, J. Wade Harper, Azad Bonni
    JOURNAL OF NEUROSCIENCE 33(46) 18015-18021 2013
  45. The XLID Protein PQBP1 and the GTPase Dynamin 2 Define a Signaling Link that Orchestrates Ciliary Morphogenesis in Postmitotic Neurons
    Yoshiho Ikeuchi, Luis de la Torre-Ubieta, Takahiko Matsuda, Hanno Steen, Hitoshi Okazawa, Azad Bonni
    CELL REPORTS 4(5) 879-889 2013
  46. The X-Linked Intellectual Disability Protein PHF6 Associates with the PAF1 Complex and Regulates Neuronal Migration in the Mammalian Brain
    Chi Zhang, Luis A. Mejia, Ju Huang, Pamela Valnegri, Eric J. Bennett, Julius Anckar, Arezu Jahani-Asl, Gilbert Gallardo, Yoshiho Ikeuchi, Tomoko Yamada, Michael Rudnicki, J. Wade Harper, Azad Bonni
    NEURON 78(6) 986-993 2013
  47. A TRPC5-regulated calcium signaling pathway controls dendrite patterning in the mammalian brain
    Sidharth V. Puram, Antonio Riccio, Samir Koirala, Yoshiho Ikeuchi, Albert H. Kim, Gabriel Corfas, Azad Bonni
    GENES & DEVELOPMENT 25(24) 2659-2673 2011
  48. A CaMKIIβ signaling pathway at the centrosome regulates dendrite patterning in the brain.
    Puram SV, Kim AH, Ikeuchi Y, Wilson-Grady JT, Merdes A, Gygi SP, Bonni A
    Nature neuroscience 14(8) 973-U58 2011
  49. An OBSL1-Cul7(Fbxw8) Ubiquitin Ligase Signaling Mechanism Regulates Golgi Morphology and Dendrite Patterning
    Nadia Litterman, Yoshiho Ikeuchi, Gilbert Gallardo, Brenda C. O'Connell, Mathew E. Sowa, Steven P. Gygi, J. Wade Harper, Azad Bonni
    PLOS BIOLOGY 9(5) e1001060 2011
  50. An Isoform-Specific SnoN1-FOXO1 Repressor Complex Controls Neuronal Morphogenesis and Positioning in the Mammalian Brain
    Mai Anh Huynh, Yoshiho Ikeuchi, Stuart Netherton, Luis de la Torre-Ubieta, Rahul Kanadia, Judith Stegmueller, Constance Cepko, Shirin Bonni, Azad Bonni
    NEURON69(5) 930-944 2011
  51. A JIP3-regulated GSK3β/DCX signaling pathway restricts axon branching.
    Bilimoria PM, de la Torre-Ubieta L, Ikeuchi Y, Becker EB, Reiner O, Bonni A
    The Journal of neuroscience : the official journal of the Society for Neuroscience 30(50) 16766-16776 2010
  52. Agmatine-conjugated cytidine in a tRNA anticodon is essential for AUA decoding in archaea
    Yoshiho Ikeuchi, Satoshi Kimura, Tomoyuki Numata, Daigo Nakamura, Takashi Yokogawa, Toshihiko Ogata, Takeshi Wada, Takeo Suzuki, Tsutomu Suzuki
    NATURE CHEMICAL BIOLOGY 6(4) 277-282 2010
  53. A FOXO-Pak1 transcriptional pathway controls neuronal polarity
    Luis de la Torre-Ubieta, Brice Gaudilliere, Yue Yang, Yoshiho Ikeuchi, Tomoko Yamada, Sara DiBacco, Judith Stegmueller, Ulrich Schueller, Dervis A. Salih, David Rowitch, Anne Brunet, Azad Bonni
    GENES & DEVELOPMENT 24(8) 799-813 2010
  54. A Cdc20-APC Ubiquitin Signaling Pathway Regulates Presynaptic Differentiation
    Yue Yang, Albert H. Kim, Tomoko Yamada, Bei Wu, Parizad M. Bilimoria, Yoshiho Ikeuchi, Nuria de la Iglesia, Jie Shen, Azad Bonni
    SCIENCE 326(5952) 575-578 2009
  55. RNA helicase module in an acetyltransferase that modifies a specific tRNA anticodon
    Sarin Chimnaronk, Tateki Suzuki, Tetsuhiro Manita, Yoshiho Ikeuchi, Min Yao, Tsutomu Suzuki, Isao Tanaka
    EMBO JOURNAL 28(9) 1362-1373 2009
  56. A SnoN-Ccd1 Pathway Promotes Axonal Morphogenesis in the Mammalian Brain
    Yoshiho Ikeuchi, Judith Stegmueller, Stuart Netherton, Mai Anh Huynh, Masayuki Masu, David Frank, Shirin Bonni, Azad Bonni
    JOURNAL OF NEUROSCIENCE 29(13) 4312-4321 2009
  57. A Centrosomal Cdc20-APC Pathway Controls Dendrite Morphogenesis in Postmitotic Neurons
    Albert H. Kim, Sidharth V. Puram, Parizad M. Bilimoria, Yoshiho Ikeuchi, Samantha Keough, Michael Wong, David Rowitch, Azad Bonni
    CELL 136(2) 322-336 2009
  58. The RNA acetyltransferase driven by ATP hydrolysis synthesizes N-4-acetylcytidine of tRNA anticodon
    Yoshiho Ikeuchi, Kei Kitahara, Tsutomu Suzuki
    EMBO JOURNAL 27(16) 2194-2203 2008
  59. Mass spectrometric identification and characterization of RNA-modifying enzymes
    Tsutomu Suzuki, Yoshiho Ikeuchi, Akiko Noma, Takeo Suzuki, Yuriko Sakaguchi
    Methods in Enzymology 425 211-229 2007
  60. The substrate specificity of tRNA (m(1)G37) methyltransferase (TrmD) from Aquifex aeolicus
    Hiroshi Takeda, Takashi Toyooka, Yoshiho Ikeuchi, Shin-ichi Yokobori, Kan Okadome, Fuyumi Takano, Tairo Oshima, Tsutomu Suzuki, Yaeta Endo, Hiroyuki Hori
    GENES TO CELLS 11(12) 1353-1365 2006
  61. Snapshots of tRNA sulphuration via an adenylated intermediate
    Tomoyuki Numata, Yoshiho Ikeuchi, Shuya Fukai, Tsutomu Suzuki, Osamu Nureki
    NATURE 442(7101) 419-424 2006
  62. Biosynthesis of wybutosine, a hyper-modified nucleoside in eukaryotic phenylalanine tRNA
    Akiko Noma, Yohei Kirino, Yoshiho Ikeuchi, Tsutomu Suzuki
    EMBO JOURNAL 25(10) 2142-2154 2006
  63. Involvement of the Escherichia coli folate-binding protein YgfZ in RNA modification and regulation of chromosomal replication initiation (vol 59, pg 265, 2005)
    T Ote, M Hashimoto, Y Ikeuchi, M Su'etsugu, T Suzuki, T Katayama, JI Kato
    MOLECULAR MICROBIOLOGY 60(1) 252-252 2006
  64. Crystallization and preliminary X-ray analysis of the tRNA thiolation enzyme MnmA from Escherichia coli complexed with tRNA(Glu)
    T Numata, Y Ikeuchi, S Fukai, H Adachi, H Matsumura, K Takano, S Murakami, T Inoue, Y Mori, T Sasaki, T Suzuki, O Nureki
    ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY AND CRYSTALLIZATION COMMUNICATIONS 62(4) 368-371 2006
  65. A gene involved in modifying transfer RNA is required for fungal pathogenicity and stress tolerance of Colletotrichum lagenarium
    Y Takano, N Takayanagi, H Hori, Y Ikeuchi, T Suzuki, A Kimura, T Okuno
    MOLECULAR MICROBIOLOGY 60(1) 81-92 2006
  66. Structural basis for sulfur relay to RNA mediated by heterohexameric TusBCD complex
    T Numata, S Fukai, Y Ikeuchi, T Suzuki, O Nureki
    STRUCTURE 14(2) 357-366 2006
  67. Mechanistic Insights into Sulfur Relay by Multiple Sulfur Mediators Involved in Thiouridine Biosynthesis at tRNA Wobble Positions
    Y Ikeuchi, N Shigi, J Kato, A Nishimura, T Suzuki
    MOLECULAR CELL 21(1) 97-108 2006
  68. Molecular mechanism of lysidine synthesis that determines tRNA identity and codon recognition
    Y Ikeuchi, A Soma, T Ote, J Kato, Y Sekine, T Suzuki
    MOLECULAR CELL 19(2) 235-246 2005
  69. Structural basis for lysidine formation by ATP pyrophosphatase accompanied by a lysine-specific loop and a tRNA-recognition domain
    K Nakanishi, S Fukai, Y Ikeuchi, A Soma, Y Sekine, T Suzuki, O Nureki
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 102(21) 7487-7492 2005
  70. Substrate tRNA recognition mechanism of tRNA (m(7)G46) methyltransferase from Aquifex aeolicus
    H Okamoto, K Watanabe, Y Ikeuchi, T Suzuki, Y Endo, H Hori
    JOURNAL OF BIOLOGICAL CHEMISTRY 279(47) 49151-49159 2004
  71. An RNA-modifying enzyme that governs both the codon and amino acid specificities of isoleucine tRNA
    A Soma, Y Ikeuchi, S Kanemasa, K Kobayashi, N Ogasawara, T Ote, J Kato, K Watanabe, Y Sekine, T Suzuki
    MOLECULAR CELL 12(3) 689-698 2003

Reviews

  1. Advances in construction and modeling of functional neural circuits in vitro.
    Siu Yu A Chow, Huaruo Hu, Tatsuya Osaki, Timothée Levi, Yoshiho Ikeuchi
    Neurochemical research 47(9) 2529-2544 2022
  2. New approaches to understand dynamics of protein synthesis in neurons
    Chow A, Ikeuchi Y.
    SEISAN KENKYU vol 69, pp 115-121, 2017
  3. SnoN: bridging neurobiology and cancer biology.
    Pot I, Ikeuchi Y, Bonni A, Bonni S.
    Current Molecular Medicine vol 10, pp667-73, 2010

日本語論文・総説

  1. 試験管内で脳は作れるのか？培養神経細胞から脳オルガノイド神経回路への発展と今後の展望
    池内 与志穂
    日本神経回路学会誌 28 巻 4 号 p. 151-161 2021
  2. 脳オルガノイド研究の現状とこれから
    大﨑 達哉，金城 結海夏，池内 与志穂
    生産研究 72 巻 3 号 p. 251-255 2020
  3. 神経特異的な制御を受けて生産される新生タンパク質の探索
    梅垣祐介，池内与志穂
    生産研究 vol 68, pp 201-204 2016
  4. 神経変性疾患の理解と治療へ向けた研究の概況と新しいアプローチ
    川田治良，藤井輝夫，池内与志穂
    生産研究 vol 68, pp 205-210, 2016
  5. RNA修飾に関わる硫黄リレータンパク質群の同定
    池内 与志穂，鈴木 勉
    細胞工学 vol 25, pp 400-1 2006
  6. 機能性RNAのマススペクトロメトリー
    鈴木 勉，池内 与志穂，鈴木 健夫
    実験医学増刊 vol 22, pp 2511-22 2004
  7. リボヌクレオーム解析：RNA修飾遺伝子の網羅的探索
    池内 与志穂，鈴木 勉
    細胞工学 vol 22, pp 945-50 2003